1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:3.59e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS03230
Response regulator NarL family
Bacillus sp. 41-22 · GCF_025809295
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025809295#LCF45_RS03230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:9.89e-25:204:55:58- Raw architecture: Response_reg:4:3.59e-34:116:113:111#HTH_LUXR:150:9.89e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025809295::NZ_CP084035.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span641473-643948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_03225RefSeq proteinWP_002035350.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00010Context members
LCF45_RS03225LCF45_RS03230
Partner locus tags
LCF45_RS03225LCF45_RS03230
Partner old locus tags
LCF45_03220LCF45_03225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002035350.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TPN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TPN7_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS03230Primary locus identifier stored in the genes table.
Old locus tagLCF45_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval643 307-643 948 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span641 473-643 948 ntGCF_025809295::NZ_CP084035.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span641 473-643 948 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
641 473 nt643 948 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCF45_RS03225GCF_025809295#LCF45_RS03225
HKClassic
641 473-643 305 nt · Forward (+)
LCF45_RS03230GCF_025809295#LCF45_RS03230
RRNarLCurrent focus
643 307-643 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962476
Simplified PFAM architecture for RROC_1962476
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1962476
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key