1 HisKA_3#1
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:2.43e-18:467:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS03225
Histidine kinase, Classic
Bacillus sp. 41-22 · GCF_025809295
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025809295#LCF45_RS03225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 610 aa (24.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.000000000000114:603:97:109- Raw architecture: HisKA_3:403:2.43e-18:467:65:68#HATPase_c:517:0.000000000000114:603:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025809295::NZ_CP084035.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span641473-643948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_03220RefSeq proteinWP_263894528.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00010Context members
LCF45_RS03225LCF45_RS03230
Partner locus tags
LCF45_RS03225LCF45_RS03230
Partner old locus tags
LCF45_03220LCF45_03225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_263894528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS03225Primary locus identifier stored in the genes table.
Old locus tagLCF45_03220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval641 473-643 305 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span641 473-643 948 ntGCF_025809295::NZ_CP084035.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span641 473-643 948 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
641 473 nt643 948 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCF45_RS03225GCF_025809295#LCF45_RS03225
HKClassicCurrent focus
641 473-643 305 nt · Forward (+)
LCF45_RS03230GCF_025809295#LCF45_RS03230
RRNarL
643 307-643 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025809295#LCF45_RS03225The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1006945
Simplified PFAM architecture for HKOC_1006945
PFAM domain coverage: 157 / 610 aa (25.7%)
1 aa610 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 2
- Matched identifier: HKOC_1006945
- Positioned domains: HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_025809295#LCF45_RS03225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key