1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:7.93e-29:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS02935
Response regulator, unclassified
Bacillus sp. 41-22 · GCF_025809295
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025809295#LCF45_RS02935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 235 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.93e-29:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025809295::NZ_CP084035.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span571347-572054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_02935RefSeq proteinWP_078203665.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00008Context members
LCF45_RS02935
Partner locus tags
LCF45_RS02935
Partner old locus tags
LCF45_02935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078203665.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GRR9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GRR9_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS02935Primary locus identifier stored in the genes table.
Old locus tagLCF45_02935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval571 347-572 054 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span571 347-572 054 ntGCF_025809295::NZ_CP084035.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span571 347-572 054 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
571 347 nt572 054 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LCF45_RS02935GCF_025809295#LCF45_RS02935
RRunclassifiedCurrent focus
571 347-572 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014505#BW899_RS19290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1021996
Simplified PFAM architecture for RROC_1021996
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1021996
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_002014505#BW899_RS19290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key