1 HisKA#1
108-174 aa · 67 aa · 19.9% of protein
Raw token
HisKA:108:4.1e-16:174:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS01675
Histidine kinase, Classic
Bacillus sp. 41-22 · GCF_025809295
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025809295#LCF45_RS01675Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 337 aa (52.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-330 aa · 110 aa · 32.6% of protein
Raw token
HATPase_c:221:1.45e-27:330:110:109- Raw architecture: HisKA:108:4.1e-16:174:67:64#HATPase_c:221:1.45e-27:330:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025809295::NZ_CP084035.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span300584-302300Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_01675RefSeq proteinWP_263894461.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00003Context members
LCF45_RS01675LCF45_RS01680
Partner locus tags
LCF45_RS01675LCF45_RS01680
Partner old locus tags
LCF45_01675LCF45_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_263894461.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS01675Primary locus identifier stored in the genes table.
Old locus tagLCF45_01675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval300 584-301 597 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span300 584-302 300 ntGCF_025809295::NZ_CP084035.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span300 584-302 300 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
300 584 nt302 300 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCF45_RS01675GCF_025809295#LCF45_RS01675
HKClassicCurrent focus
300 584-301 597 nt · Reverse (-)
LCF45_RS01680GCF_025809295#LCF45_RS01680
RROmpR
301 587-302 300 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025809295#LCF45_RS01675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2845573
Simplified PFAM architecture for HKOC_2845573
PFAM domain coverage: 177 / 337 aa (52.5%)
1 aa337 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[108-174] | HATPase_c[222-331]
- Domain count: 2
- Matched identifier: HKOC_2845573
- Positioned domains: HisKA 108-174 ; HATPase_c 222-331
Cluster members and taxonomy
Representative gene: GCF_025809295#LCF45_RS01675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key