1 HisKA#1
51-98 aa · 48 aa · 18.3% of protein
Raw token
HisKA:51:0.000000786:98:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U76_RS08195
Histidine kinase, Classic
Clostridioides difficile · GCF_025534035
ClassHKTypeClassicLength262 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025534035#H3U76_RS08195Stable P2CS identifier used across views.
GenomeGCF_025534035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 262 aa (59.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
144-252 aa · 109 aa · 41.6% of protein
Raw token
HATPase_c:144:6.07e-23:252:109:109- Raw architecture: HisKA:51:0.000000786:98:53:64#HATPase_c:144:6.07e-23:252:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025534035::NZ_JACFXJ010000005.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63358-65064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U76_08100RefSeq proteinWP_330668966.1
Context group ID
GCF_025534035::NZ_JACFXJ010000005.1::G00041Context members
H3U76_RS08190H3U76_RS08195
Partner locus tags
H3U76_RS08190H3U76_RS08195
Partner old locus tags
H3U76_08095H3U76_08100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330668966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U76_RS08195Primary locus identifier stored in the genes table.
Old locus tagH3U76_08100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFXJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval64 276-65 064 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 358-65 064 ntGCF_025534035::NZ_JACFXJ010000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025534035::NZ_JACFXJ010000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFXJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span63 358-65 064 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 358 nt65 064 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U76_RS08190GCF_025534035#H3U76_RS08190
RROmpR
63 358-64 050 nt · Forward (+)
H3U76_RS08195GCF_025534035#H3U76_RS08195
HKClassicCurrent focus
64 276-65 064 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025534015#H3U72_RS05820Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2912756
Simplified PFAM architecture for HKOC_2912756
PFAM domain coverage: 109 / 262 aa (41.6%)
1 aa262 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[145-253]
- Domain count: 1
- Matched identifier: HKOC_2912756
- Positioned domains: HATPase_c 145-253
Cluster members and taxonomy
Representative gene: GCF_025534015#H3U72_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025534035
AssemblyASM2553403v1 · Scaffoldhaploid
Genome composition4 108 756 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key