1 HisKA#1
88-145 aa · 58 aa · 19.7% of protein
Raw token
HisKA:88:0.00000000205:145:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U78_RS18955
Histidine kinase, Classic
Clostridioides difficile · GCF_025533855
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025533855#H3U78_RS18955Stable P2CS identifier used across views.
GenomeGCF_025533855Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 295 aa (48.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
195-280 aa · 86 aa · 29.2% of protein
Raw token
HATPase_c:195:0.00000000000000324:280:91:109- Raw architecture: HisKA:88:0.00000000205:145:58:64#HATPase_c:195:0.00000000000000324:280:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025533855::NZ_JACFXB010000031.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5979-6866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U78_18830RefSeq proteinWP_262463853.1
Context group ID
GCF_025533855::NZ_JACFXB010000031.1::G00029Context members
H3U78_RS18955
Partner locus tags
H3U78_RS18955
Partner old locus tags
H3U78_18830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262463853.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U78_RS18955Primary locus identifier stored in the genes table.
Old locus tagH3U78_18830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFXB010000031.1Sequence record reported by the local genomic context database.
Genomic interval5 979-6 866 nt888 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 979-6 866 ntGCF_025533855::NZ_JACFXB010000031.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533855::NZ_JACFXB010000031.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFXB010000031.1All displayed genes belong to this local TCS context.
Neighborhood span5 979-6 866 nt888 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 979 nt6 866 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H3U78_RS18955GCF_025533855#H3U78_RS18955
HKClassicCurrent focus
5 979-6 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025533855#H3U78_RS18955The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892569
Simplified PFAM architecture for HKOC_2892569
PFAM domain coverage: 145 / 295 aa (49.2%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-145] | HATPase_c[195-279]
- Domain count: 2
- Matched identifier: HKOC_2892569
- Positioned domains: HisKA 86-145 ; HATPase_c 195-279
Cluster members and taxonomy
Representative gene: GCF_025533855#H3U78_RS18955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533855
AssemblyASM2553385v1 · Scaffoldhaploid
Genome composition4 236 041 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key