1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000184:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U70_RS03490
Histidine kinase, Classic
Clostridioides difficile · GCF_025533815
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533815#H3U70_RS03490Stable P2CS identifier used across views.
GenomeGCF_025533815Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 468 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
357-466 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:357:5.92e-18:466:110:109- Raw architecture: HisKA:245:0.00000000000184:309:65:64#HATPase_c:357:5.92e-18:466:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533815::NZ_JACFWY010000002.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286492-288650Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U70_03475RefSeq proteinWP_021370970.1
Context group ID
GCF_025533815::NZ_JACFWY010000002.1::G00030Context members
H3U70_RS03490H3U70_RS03495
Partner locus tags
H3U70_RS03490H3U70_RS03495
Partner old locus tags
H3U70_03475H3U70_03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021370970.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U70_RS03490Primary locus identifier stored in the genes table.
Old locus tagH3U70_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFWY010000002.1Sequence record reported by the local genomic context database.
Genomic interval286 492-287 898 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 492-288 650 ntGCF_025533815::NZ_JACFWY010000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533815::NZ_JACFWY010000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFWY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span286 492-288 650 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 492 nt288 650 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U70_RS03490GCF_025533815#H3U70_RS03490
HKClassicCurrent focus
286 492-287 898 nt · Reverse (-)
H3U70_RS03495GCF_025533815#H3U70_RS03495
RROmpR
287 943-288 650 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449045#QCI_RS03600Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1738103
Simplified PFAM architecture for HKOC_1738103
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1738103
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000449045#QCI_RS03600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533815
AssemblyASM2553381v1 · Scaffoldhaploid
Genome composition4 148 140 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key