1 Response_reg#1
4-112 aa · 109 aa · 50.5% of protein
Raw token
Response_reg:4:2.62e-30:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U65_RS02235
Response regulator OmpR family
Clostridioides difficile · GCF_025533795
ClassRRTypeOmpRLength216 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533795#H3U65_RS02235Stable P2CS identifier used across views.
GenomeGCF_025533795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 216 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.8% of protein
Raw token
Trans_reg_C:143:1.14e-25:215:73:77- Raw architecture: Response_reg:4:2.62e-30:112:110:111#Trans_reg_C:143:1.14e-25:215:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533795::NZ_JACFWX010000001.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span472148-473713Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U65_02220RefSeq proteinWP_262457246.1
Context group ID
GCF_025533795::NZ_JACFWX010000001.1::G00026Context members
H3U65_RS02230H3U65_RS02235
Partner locus tags
H3U65_RS02230H3U65_RS02235
Partner old locus tags
H3U65_02215H3U65_02220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262457246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U65_RS02235Primary locus identifier stored in the genes table.
Old locus tagH3U65_02220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFWX010000001.1Sequence record reported by the local genomic context database.
Genomic interval473 063-473 713 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span472 148-473 713 ntGCF_025533795::NZ_JACFWX010000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533795::NZ_JACFWX010000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFWX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span472 148-473 713 nt1 566 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
472 148 nt473 713 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U65_RS02230GCF_025533795#H3U65_RS02230
HKClassic
472 148-473 056 nt · Reverse (-)
H3U65_RS02235GCF_025533795#H3U65_RS02235
RROmpRCurrent focus
473 063-473 713 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025533715#H3U59_RS02245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1893468
Simplified PFAM architecture for RROC_1893468
PFAM domain coverage: 182 / 216 aa (84.3%)
1 aa216 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1893468
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_025533715#H3U59_RS02245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533795
AssemblyASM2553379v1 · Scaffoldhaploid
Genome composition4 146 962 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key