1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:2.02e-26:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U42_RS12840
Response regulator OmpR family
Clostridioides difficile · GCF_025533515
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533515#H3U42_RS12840Stable P2CS identifier used across views.
GenomeGCF_025533515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 228 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:148:2.52e-19:223:77:77- Raw architecture: Response_reg:3:2.02e-26:115:113:111#Trans_reg_C:148:2.52e-19:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533515::NZ_JACFWK010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4080-6052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U42_12795RefSeq proteinWP_131035212.1
Context group ID
GCF_025533515::NZ_JACFWK010000010.1::G00001Context members
H3U42_RS12835H3U42_RS12840
Partner locus tags
H3U42_RS12835H3U42_RS12840
Partner old locus tags
H3U42_12790H3U42_12795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131035212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U42_RS12840Primary locus identifier stored in the genes table.
Old locus tagH3U42_12795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFWK010000010.1Sequence record reported by the local genomic context database.
Genomic interval5 366-6 052 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 080-6 052 ntGCF_025533515::NZ_JACFWK010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533515::NZ_JACFWK010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFWK010000010.1All displayed genes belong to this local TCS context.
Neighborhood span4 080-6 052 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 080 nt6 052 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U42_RS12835GCF_025533515#H3U42_RS12835
HKClassic
4 080-5 372 nt · Reverse (-)
H3U42_RS12840GCF_025533515#H3U42_RS12840
RROmpRCurrent focus
5 366-6 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004319805#E0R89_RS17635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1316765
Simplified PFAM architecture for RROC_1316765
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1316765
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_004319805#E0R89_RS17635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533515
AssemblyASM2553351v1 · Scaffoldhaploid
Genome composition4 177 884 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 51 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key