1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.42e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U35_RS00940
Response regulator OmpR family
Clostridioides difficile · GCF_025533455
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533455#H3U35_RS00940Stable P2CS identifier used across views.
GenomeGCF_025533455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:5.52e-32:227:77:77- Raw architecture: Response_reg:4:3.42e-28:113:111:111#Trans_reg_C:151:5.52e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533455::NZ_JACFWD010000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span221465-223476Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U35_00945RefSeq proteinWP_009890737.1
Context group ID
GCF_025533455::NZ_JACFWD010000001.1::G00018Context members
H3U35_RS00940H3U35_RS00945
Partner locus tags
H3U35_RS00940H3U35_RS00945
Partner old locus tags
H3U35_00945H3U35_00950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009890737.1Primary protein accession used for annex mappings.
UniProt accessionA0A069B0L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069B0L7_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U35_RS00940Primary locus identifier stored in the genes table.
Old locus tagH3U35_00945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFWD010000001.1Sequence record reported by the local genomic context database.
Genomic interval221 465-222 172 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span221 465-223 476 ntGCF_025533455::NZ_JACFWD010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533455::NZ_JACFWD010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFWD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span221 465-223 476 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 465 nt223 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U35_RS00940GCF_025533455#H3U35_RS00940
RROmpRCurrent focus
221 465-222 172 nt · Forward (+)
H3U35_RS00945GCF_025533455#H3U35_RS00945
HKClassic
222 166-223 476 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016365
Simplified PFAM architecture for RROC_1016365
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016365
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533455
AssemblyASM2553345v1 · Contighaploid
Genome composition4 068 230 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key