1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.00002:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U39_RS15180
Histidine kinase, Classic
Clostridioides difficile · GCF_025533315
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533315#H3U39_RS15180Stable P2CS identifier used across views.
GenomeGCF_025533315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 305 aa (74.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.000000107:150:66:643 HATPase_c#3
197-303 aa · 107 aa · 35.1% of protein
Raw token
HATPase_c:197:1.57e-30:303:107:109- Raw architecture: HAMP:4:0.00002:56:53:69#HisKA:85:0.000000107:150:66:64#HATPase_c:197:1.57e-30:303:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533315::NZ_JACFVZ010000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6105-7721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U39_15135RefSeq proteinWP_021371112.1
Context group ID
GCF_025533315::NZ_JACFVZ010000014.1::G00008Context members
H3U39_RS15175H3U39_RS15180
Partner locus tags
H3U39_RS15175H3U39_RS15180
Partner old locus tags
H3U39_15130H3U39_15135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021371112.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U39_RS15180Primary locus identifier stored in the genes table.
Old locus tagH3U39_15135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVZ010000014.1Sequence record reported by the local genomic context database.
Genomic interval6 804-7 721 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 105-7 721 ntGCF_025533315::NZ_JACFVZ010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533315::NZ_JACFVZ010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVZ010000014.1All displayed genes belong to this local TCS context.
Neighborhood span6 105-7 721 nt1 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 105 nt7 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U39_RS15175GCF_025533315#H3U39_RS15175
RROmpR
6 105-6 797 nt · Forward (+)
H3U39_RS15180GCF_025533315#H3U39_RS15180
HKClassicCurrent focus
6 804-7 721 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449045#QCI_RS05670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882098
Simplified PFAM architecture for HKOC_2882098
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-303]
- Domain count: 2
- Matched identifier: HKOC_2882098
- Positioned domains: HisKA 85-148 ; HATPase_c 199-303
Cluster members and taxonomy
Representative gene: GCF_000449045#QCI_RS05670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533315
AssemblyASM2553331v1 · Scaffoldhaploid
Genome composition4 161 189 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key