1 Response_reg#1
5-63 aa · 59 aa · 81.9% of protein
Raw token
Response_reg:5:0.000000000000786:63:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U19_RS10550
Response regulator, CheY family
Clostridioides difficile · GCF_025533115
ClassRRTypeCheYLength72 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025533115#H3U19_RS10550Stable P2CS identifier used across views.
GenomeGCF_025533115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length72 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage59 / 72 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000786:63:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025533115::NZ_JACFVK010000005.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span139986-140204Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U19_10500RefSeq proteinWP_021366621.1
Context group ID
GCF_025533115::NZ_JACFVK010000005.1::G00032Context members
H3U19_RS10550
Partner locus tags
H3U19_RS10550
Partner old locus tags
H3U19_10500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366621.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AZK6Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AZK6_CLODIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U19_RS10550Primary locus identifier stored in the genes table.
Old locus tagH3U19_10500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVK010000005.1Sequence record reported by the local genomic context database.
Genomic interval139 986-140 204 nt219 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 986-140 204 ntGCF_025533115::NZ_JACFVK010000005.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533115::NZ_JACFVK010000005.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span139 986-140 204 nt219 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 986 nt140 204 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H3U19_RS10550GCF_025533115#H3U19_RS10550
RRCheYCurrent focus
139 986-140 204 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS08355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477754
Simplified PFAM architecture for RROC_2477754
PFAM domain coverage: 65 / 72 aa (90.3%)
1 aa72 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-69]
- Domain count: 1
- Matched identifier: RROC_2477754
- Positioned domains: Response_reg 5-69 ; Response_reg 5-69
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS08355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533115
AssemblyASM2553311v1 · Scaffoldhaploid
Genome composition4 166 190 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key