1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:2.63e-28:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U25_RS09020
Response regulator OmpR family
Clostridioides difficile · GCF_025533085
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533085#H3U25_RS09020Stable P2CS identifier used across views.
GenomeGCF_025533085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:3.3e-30:232:78:77- Raw architecture: Response_reg:12:2.63e-28:120:110:111#Trans_reg_C:155:3.3e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533085::NZ_JACFVO010000007.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75931-77887Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U25_08975RefSeq proteinWP_170875566.1
Context group ID
GCF_025533085::NZ_JACFVO010000007.1::G00052Context members
H3U25_RS09020H3U25_RS09025
Partner locus tags
H3U25_RS09020H3U25_RS09025
Partner old locus tags
H3U25_08975H3U25_08980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_170875566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U25_RS09020Primary locus identifier stored in the genes table.
Old locus tagH3U25_08975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVO010000007.1Sequence record reported by the local genomic context database.
Genomic interval75 931-76 656 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 931-77 887 ntGCF_025533085::NZ_JACFVO010000007.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533085::NZ_JACFVO010000007.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVO010000007.1All displayed genes belong to this local TCS context.
Neighborhood span75 931-77 887 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 931 nt77 887 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U25_RS09020GCF_025533085#H3U25_RS09020
RROmpRCurrent focus
75 931-76 656 nt · Forward (+)
H3U25_RS09025GCF_025533085#H3U25_RS09025
HKClassic
76 634-77 887 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757585#BW25_RS17225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0865878
Simplified PFAM architecture for RROC_0865878
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0865878
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_001757585#BW25_RS17225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533085
AssemblyASM2553308v1 · Scaffoldhaploid
Genome composition4 105 057 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key