1 HisKA#1
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.00000000000000254:298:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U28_RS12055
Histidine kinase, Classic
Clostridioides difficile · GCF_025533075
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025533075#H3U28_RS12055Stable P2CS identifier used across views.
GenomeGCF_025533075Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 453 aa (38.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-453 aa · 111 aa · 24.5% of protein
Raw token
HATPase_c:343:1.17e-20:453:111:109- Raw architecture: HisKA:234:0.00000000000000254:298:65:64#HATPase_c:343:1.17e-20:453:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025533075::NZ_JACFVP010000009.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13895-15906Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U28_11985RefSeq proteinWP_131034960.1
Context group ID
GCF_025533075::NZ_JACFVP010000009.1::G00057Context members
H3U28_RS12050H3U28_RS12055
Partner locus tags
H3U28_RS12050H3U28_RS12055
Partner old locus tags
H3U28_11980H3U28_11985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131034960.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U28_RS12055Primary locus identifier stored in the genes table.
Old locus tagH3U28_11985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVP010000009.1Sequence record reported by the local genomic context database.
Genomic interval14 545-15 906 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 895-15 906 ntGCF_025533075::NZ_JACFVP010000009.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533075::NZ_JACFVP010000009.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVP010000009.1All displayed genes belong to this local TCS context.
Neighborhood span13 895-15 906 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 895 nt15 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U28_RS12050GCF_025533075#H3U28_RS12050
RROmpR
13 895-14 554 nt · Forward (+)
H3U28_RS12055GCF_025533075#H3U28_RS12055
HKClassicCurrent focus
14 545-15 906 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS11285Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1930692
Simplified PFAM architecture for HKOC_1930692
PFAM domain coverage: 176 / 453 aa (38.9%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-298] | HATPase_c[343-453]
- Domain count: 2
- Matched identifier: HKOC_1930692
- Positioned domains: HisKA 234-298 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS11285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533075
AssemblyASM2553307v1 · Scaffoldhaploid
Genome composition4 208 684 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 55CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key