1 Response_reg#1
4-86 aa · 83 aa · 41.7% of protein
Raw token
Response_reg:4:0.00000000000161:86:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U28_RS03150
Response regulator OmpR family
Clostridioides difficile · GCF_025533075
ClassRRTypeOmpRLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025533075#H3U28_RS03150Stable P2CS identifier used across views.
GenomeGCF_025533075Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 199 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
122-195 aa · 74 aa · 37.2% of protein
Raw token
Trans_reg_C:122:8.28e-26:195:75:77- Raw architecture: Response_reg:4:0.00000000000161:86:111:111#Trans_reg_C:122:8.28e-26:195:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025533075::NZ_JACFVP010000002.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span338715-339314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U28_03145RefSeq proteinWP_131035056.1
Context group ID
GCF_025533075::NZ_JACFVP010000002.1::G00027Context members
H3U28_RS03150
Partner locus tags
H3U28_RS03150
Partner old locus tags
H3U28_03145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131035056.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U28_RS03150Primary locus identifier stored in the genes table.
Old locus tagH3U28_03145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVP010000002.1Sequence record reported by the local genomic context database.
Genomic interval338 715-339 314 nt600 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span338 715-339 314 ntGCF_025533075::NZ_JACFVP010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533075::NZ_JACFVP010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span338 715-339 314 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 715 nt339 314 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H3U28_RS03150GCF_025533075#H3U28_RS03150
RROmpRCurrent focus
338 715-339 314 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004319805#E0R89_RS04385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2145291
Simplified PFAM architecture for RROC_2145291
PFAM domain coverage: 139 / 199 aa (69.8%)
1 aa199 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-68] | Trans_reg_C[123-196]
- Domain count: 2
- Matched identifier: RROC_2145291
- Positioned domains: Response_reg 4-68 ; Response_reg 4-68 ; Trans_reg_C 123-196 ; Trans_reg_C 123-196
Cluster members and taxonomy
Representative gene: GCF_004319805#E0R89_RS04385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533075
AssemblyASM2553307v1 · Scaffoldhaploid
Genome composition4 208 684 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 55CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key