1 Response_reg#1
4-106 aa · 103 aa · 92.8% of protein
Raw token
Response_reg:4:1.27e-28:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U22_RS11315
Response regulator, CheY family
Clostridioides difficile · GCF_025533055
ClassRRTypeCheYLength111 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025533055#H3U22_RS11315Stable P2CS identifier used across views.
GenomeGCF_025533055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length111 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage103 / 111 aa (92.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa111 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.27e-28:106:104:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025533055::NZ_JACFVN010000009.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2892-3227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U22_11330RefSeq proteinWP_231302756.1
Context group ID
GCF_025533055::NZ_JACFVN010000009.1::G00058Context members
H3U22_RS11315
Partner locus tags
H3U22_RS11315
Partner old locus tags
H3U22_11330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231302756.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U22_RS11315Primary locus identifier stored in the genes table.
Old locus tagH3U22_11330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFVN010000009.1Sequence record reported by the local genomic context database.
Genomic interval2 892-3 227 nt336 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 892-3 227 ntGCF_025533055::NZ_JACFVN010000009.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025533055::NZ_JACFVN010000009.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFVN010000009.1All displayed genes belong to this local TCS context.
Neighborhood span2 892-3 227 nt336 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 892 nt3 227 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H3U22_RS11315GCF_025533055#H3U22_RS11315
RRCheYCurrent focus
2 892-3 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025532975#H3U14_RS12480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2468744
Simplified PFAM architecture for RROC_2468744
PFAM domain coverage: 103 / 111 aa (92.8%)
1 aa111 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-106]
- Domain count: 1
- Matched identifier: RROC_2468744
- Positioned domains: Response_reg 4-106
Cluster members and taxonomy
Representative gene: GCF_025532975#H3U14_RS12480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025533055
AssemblyASM2553305v1 · Scaffoldhaploid
Genome composition4 243 723 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 51 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key