1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:1.54e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3U03_RS04725
Response regulator NarL family
Clostridioides difficile · GCF_025532795
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532795#H3U03_RS04725Stable P2CS identifier used across views.
GenomeGCF_025532795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:3.95e-21:207:55:58- Raw architecture: Response_reg:6:1.54e-28:118:113:111#HTH_LUXR:153:3.95e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532795::NZ_JACFUV010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229028-230831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3U03_04725RefSeq proteinWP_044298966.1
Context group ID
GCF_025532795::NZ_JACFUV010000002.1::G00033Context members
H3U03_RS04725H3U03_RS04730
Partner locus tags
H3U03_RS04725H3U03_RS04730
Partner old locus tags
H3U03_04725H3U03_04730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044298966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3U03_RS04725Primary locus identifier stored in the genes table.
Old locus tagH3U03_04725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFUV010000002.1Sequence record reported by the local genomic context database.
Genomic interval229 028-229 675 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span229 028-230 831 ntGCF_025532795::NZ_JACFUV010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532795::NZ_JACFUV010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFUV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span229 028-230 831 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 028 nt230 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3U03_RS04725GCF_025532795#H3U03_RS04725
RRNarLCurrent focus
229 028-229 675 nt · Reverse (-)
H3U03_RS04730GCF_025532795#H3U03_RS04730
HKClassic
229 668-230 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531625#BN168_RS06500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1908219
Simplified PFAM architecture for RROC_1908219
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1908219
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_000531625#BN168_RS06500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532795
AssemblyASM2553279v1 · Scaffoldhaploid
Genome composition4 107 712 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key