1 Response_reg#1
4-114 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:4:3.06e-23:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3T76_RS16945
Response regulator LytTR family
Clostridioides difficile · GCF_025532515
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025532515#H3T76_RS16945Stable P2CS identifier used across views.
GenomeGCF_025532515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 245 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-220 aa · 79 aa · 32.2% of protein
Raw token
LytTR:142:0.0000000000000105:220:80:98- Raw architecture: Response_reg:4:3.06e-23:114:113:111#LytTR:142:0.0000000000000105:220:80:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025532515::NZ_JACFUH010000023.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37343-38080Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3T76_16790RefSeq proteinWP_003427825.1
Context group ID
GCF_025532515::NZ_JACFUH010000023.1::G00023Context members
H3T76_RS16945
Partner locus tags
H3T76_RS16945
Partner old locus tags
H3T76_16790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003427825.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YU50Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YU50_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3T76_RS16945Primary locus identifier stored in the genes table.
Old locus tagH3T76_16790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFUH010000023.1Sequence record reported by the local genomic context database.
Genomic interval37 343-38 080 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 343-38 080 ntGCF_025532515::NZ_JACFUH010000023.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532515::NZ_JACFUH010000023.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFUH010000023.1All displayed genes belong to this local TCS context.
Neighborhood span37 343-38 080 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 343 nt38 080 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H3T76_RS16945GCF_025532515#H3T76_RS16945
RRLytTRCurrent focus
37 343-38 080 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS02015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789616
Simplified PFAM architecture for RROC_0789616
PFAM domain coverage: 203 / 245 aa (82.9%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-235]
- Domain count: 2
- Matched identifier: RROC_0789616
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-235 ; LytTR 143-235
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS02015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532515
AssemblyASM2553251v1 · Scaffoldhaploid
Genome composition4 319 844 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key