1 HisKA#1
237-297 aa · 61 aa · 13.2% of protein
Raw token
HisKA:237:0.000000000172:297:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3T74_RS07020
Histidine kinase, Classic
Clostridioides difficile · GCF_025532455
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532455#H3T74_RS07020Stable P2CS identifier used across views.
GenomeGCF_025532455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 461 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
342-453 aa · 112 aa · 24.3% of protein
Raw token
HATPase_c:342:5.8e-18:453:112:109- Raw architecture: HisKA:237:0.000000000172:297:61:64#HATPase_c:342:5.8e-18:453:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532455::NZ_JACFUF010000006.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8048-10083Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3T74_06940RefSeq proteinWP_243160403.1
Context group ID
GCF_025532455::NZ_JACFUF010000006.1::G00040Context members
H3T74_RS07015H3T74_RS07020
Partner locus tags
H3T74_RS07015H3T74_RS07020
Partner old locus tags
H3T74_06935H3T74_06940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243160403.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3T74_RS07020Primary locus identifier stored in the genes table.
Old locus tagH3T74_06940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFUF010000006.1Sequence record reported by the local genomic context database.
Genomic interval8 698-10 083 nt1 386 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 048-10 083 ntGCF_025532455::NZ_JACFUF010000006.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532455::NZ_JACFUF010000006.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFUF010000006.1All displayed genes belong to this local TCS context.
Neighborhood span8 048-10 083 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 048 nt10 083 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3T74_RS07015GCF_025532455#H3T74_RS07015
RROmpR
8 048-8 716 nt · Forward (+)
H3T74_RS07020GCF_025532455#H3T74_RS07020
HKClassicCurrent focus
8 698-10 083 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025532455#H3T74_RS07020The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1828128
Simplified PFAM architecture for HKOC_1828128
PFAM domain coverage: 172 / 461 aa (37.3%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-296] | HATPase_c[342-453]
- Domain count: 2
- Matched identifier: HKOC_1828128
- Positioned domains: HisKA 237-296 ; HATPase_c 342-453
Cluster members and taxonomy
Representative gene: GCF_025532455#H3T74_RS07020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532455
AssemblyASM2553245v1 · Scaffoldhaploid
Genome composition4 293 304 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 51 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key