1 Response_reg#1
4-110 aa · 107 aa · 48.2% of protein
Raw token
Response_reg:4:1.41e-25:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3T74_RS07015
Response regulator OmpR family
Clostridioides difficile · GCF_025532455
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532455#H3T74_RS07015Stable P2CS identifier used across views.
GenomeGCF_025532455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 222 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:145:9.56e-22:218:76:77- Raw architecture: Response_reg:4:1.41e-25:110:110:111#Trans_reg_C:145:9.56e-22:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532455::NZ_JACFUF010000006.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8048-10083Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3T74_06935RefSeq proteinWP_243160402.1
Context group ID
GCF_025532455::NZ_JACFUF010000006.1::G00040Context members
H3T74_RS07015H3T74_RS07020
Partner locus tags
H3T74_RS07015H3T74_RS07020
Partner old locus tags
H3T74_06935H3T74_06940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243160402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3T74_RS07015Primary locus identifier stored in the genes table.
Old locus tagH3T74_06935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFUF010000006.1Sequence record reported by the local genomic context database.
Genomic interval8 048-8 716 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 048-10 083 ntGCF_025532455::NZ_JACFUF010000006.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532455::NZ_JACFUF010000006.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFUF010000006.1All displayed genes belong to this local TCS context.
Neighborhood span8 048-10 083 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 048 nt10 083 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3T74_RS07015GCF_025532455#H3T74_RS07015
RROmpRCurrent focus
8 048-8 716 nt · Forward (+)
H3T74_RS07020GCF_025532455#H3T74_RS07020
HKClassic
8 698-10 083 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025532455#H3T74_RS07015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1658958
Simplified PFAM architecture for RROC_1658958
PFAM domain coverage: 181 / 222 aa (81.5%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1658958
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_025532455#H3T74_RS07015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532455
AssemblyASM2553245v1 · Scaffoldhaploid
Genome composition4 293 304 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 51 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key