1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.99e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3T53_RS07225
Response regulator OmpR family
Clostridioides difficile · GCF_025532415
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532415#H3T53_RS07225Stable P2CS identifier used across views.
GenomeGCF_025532415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:3.32e-22:214:78:77- Raw architecture: Response_reg:3:1.99e-28:111:111:111#Trans_reg_C:142:3.32e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532415::NZ_JACFUI010000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83959-85939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH3T53_07175RefSeq proteinWP_009898528.1
Context group ID
GCF_025532415::NZ_JACFUI010000005.1::G00038Context members
H3T53_RS07225H3T53_RS07230
Partner locus tags
H3T53_RS07225H3T53_RS07230
Partner old locus tags
H3T53_07175H3T53_07180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009898528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3T53_RS07225Primary locus identifier stored in the genes table.
Old locus tagH3T53_07175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACFUI010000005.1Sequence record reported by the local genomic context database.
Genomic interval83 959-84 612 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 959-85 939 ntGCF_025532415::NZ_JACFUI010000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532415::NZ_JACFUI010000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACFUI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span83 959-85 939 nt1 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 959 nt85 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3T53_RS07225GCF_025532415#H3T53_RS07225
RROmpRCurrent focus
83 959-84 612 nt · Forward (+)
H3T53_RS07230GCF_025532415#H3T53_RS07230
HKClassic
84 617-85 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0219285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847666
Simplified PFAM architecture for RROC_1847666
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1847666
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0219285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532415
AssemblyASM2553241v1 · Contighaploid
Genome composition4 053 897 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key