1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.95e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4F51_RS00765
Response regulator OmpR family
Clostridioides difficile · GCF_025532325
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532325#J4F51_RS00765Stable P2CS identifier used across views.
GenomeGCF_025532325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:7.26e-31:219:77:77- Raw architecture: Response_reg:4:1.95e-34:113:111:111#Trans_reg_C:146:7.26e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532325::NZ_JAGDLT010000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7656-9454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4F51_00765RefSeq proteinWP_009898333.1
Context group ID
GCF_025532325::NZ_JAGDLT010000004.1::G00001Context members
J4F51_RS00765J4F51_RS00770
Partner locus tags
J4F51_RS00765J4F51_RS00770
Partner old locus tags
J4F51_00765J4F51_00770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009898333.1Primary protein accession used for annex mappings.
UniProt accessionA0A031WK05Primary UniProt accession resolved in the annex database.
UniProt IDA0A031WK05_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4F51_RS00765Primary locus identifier stored in the genes table.
Old locus tagJ4F51_00765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLT010000004.1Sequence record reported by the local genomic context database.
Genomic interval7 656-8 327 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 656-9 454 ntGCF_025532325::NZ_JAGDLT010000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532325::NZ_JAGDLT010000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span7 656-9 454 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 656 nt9 454 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4F51_RS00765GCF_025532325#J4F51_RS00765
RROmpRCurrent focus
7 656-8 327 nt · Forward (+)
J4F51_RS00770GCF_025532325#J4F51_RS00770
HKClassic
8 324-9 454 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0218335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587357
Simplified PFAM architecture for RROC_1587357
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1587357
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0218335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532325
AssemblyASM2553232v1 · Scaffoldhaploid
Genome composition4 140 790 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key