1 Response_reg#1
4-111 aa · 108 aa · 49.3% of protein
Raw token
Response_reg:4:2.32e-33:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4G20_RS00315
Response regulator OmpR family
Clostridioides difficile · GCF_025532285
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025532285#J4G20_RS00315Stable P2CS identifier used across views.
GenomeGCF_025532285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:144:3.12e-23:218:77:77- Raw architecture: Response_reg:4:2.32e-33:111:110:111#Trans_reg_C:144:3.12e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025532285::NZ_JAGDLW010000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60138-60797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4G20_00310RefSeq proteinWP_074140660.1
Context group ID
GCF_025532285::NZ_JAGDLW010000001.1::G00003Context members
J4G20_RS00315
Partner locus tags
J4G20_RS00315
Partner old locus tags
J4G20_00310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074140660.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4G20_RS00315Primary locus identifier stored in the genes table.
Old locus tagJ4G20_00310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLW010000001.1Sequence record reported by the local genomic context database.
Genomic interval60 138-60 797 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 138-60 797 ntGCF_025532285::NZ_JAGDLW010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532285::NZ_JAGDLW010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span60 138-60 797 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 138 nt60 797 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J4G20_RS00315GCF_025532285#J4G20_RS00315
RROmpRCurrent focus
60 138-60 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004318705#E0R09_RS02525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1778726
Simplified PFAM architecture for RROC_1778726
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1778726
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_004318705#E0R09_RS02525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532285
AssemblyASM2553228v1 · Scaffoldhaploid
Genome composition4 279 366 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key