1 HisKA#1
46-93 aa · 48 aa · 18.7% of protein
Raw token
HisKA:46:0.000000606:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4F53_RS10120
Histidine kinase, Classic
Clostridioides difficile · GCF_025532265
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532265#J4F53_RS10120Stable P2CS identifier used across views.
GenomeGCF_025532265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 257 aa (61.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
139-247 aa · 109 aa · 42.4% of protein
Raw token
HATPase_c:139:4.8e-23:247:109:109- Raw architecture: HisKA:46:0.000000606:93:53:64#HATPase_c:139:4.8e-23:247:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532265::NZ_JAGDLU010000043.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159415-161121Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4F53_10055RefSeq proteinWP_330656837.1
Context group ID
GCF_025532265::NZ_JAGDLU010000043.1::G00025Context members
J4F53_RS10115J4F53_RS10120
Partner locus tags
J4F53_RS10115J4F53_RS10120
Partner old locus tags
J4F53_10050J4F53_10055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330656837.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4F53_RS10120Primary locus identifier stored in the genes table.
Old locus tagJ4F53_10055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLU010000043.1Sequence record reported by the local genomic context database.
Genomic interval160 348-161 121 nt774 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 415-161 121 ntGCF_025532265::NZ_JAGDLU010000043.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532265::NZ_JAGDLU010000043.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLU010000043.1All displayed genes belong to this local TCS context.
Neighborhood span159 415-161 121 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 415 nt161 121 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4F53_RS10115GCF_025532265#J4F53_RS10115
RROmpR
159 415-160 107 nt · Forward (+)
J4F53_RS10120GCF_025532265#J4F53_RS10120
HKClassicCurrent focus
160 348-161 121 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025532265#J4F53_RS10120The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916316
Simplified PFAM architecture for HKOC_2916316
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916316
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_025532265#J4F53_RS10120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532265
AssemblyASM2553226v1 · Scaffoldhaploid
Genome composition4 076 456 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key