1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:3.3e-31:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4F52_RS13945
Response regulator OmpR family
Clostridioides difficile · GCF_025532225
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532225#J4F52_RS13945Stable P2CS identifier used across views.
GenomeGCF_025532225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 219 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:144:3.03e-24:218:77:77- Raw architecture: Response_reg:4:3.3e-31:112:112:111#Trans_reg_C:144:3.03e-24:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532225::NZ_JAGDLZ010000057.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88292-90303Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4F52_13775RefSeq proteinWP_131034959.1
Context group ID
GCF_025532225::NZ_JAGDLZ010000057.1::G00049Context members
J4F52_RS13945J4F52_RS13950
Partner locus tags
J4F52_RS13945J4F52_RS13950
Partner old locus tags
J4F52_13775J4F52_13780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131034959.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4F52_RS13945Primary locus identifier stored in the genes table.
Old locus tagJ4F52_13775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLZ010000057.1Sequence record reported by the local genomic context database.
Genomic interval88 292-88 951 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 292-90 303 ntGCF_025532225::NZ_JAGDLZ010000057.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532225::NZ_JAGDLZ010000057.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLZ010000057.1All displayed genes belong to this local TCS context.
Neighborhood span88 292-90 303 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 292 nt90 303 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4F52_RS13945GCF_025532225#J4F52_RS13945
RROmpRCurrent focus
88 292-88 951 nt · Forward (+)
J4F52_RS13950GCF_025532225#J4F52_RS13950
HKClassic
89 068-90 303 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004319805#E0R89_RS17205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1778727
Simplified PFAM architecture for RROC_1778727
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1778727
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_004319805#E0R89_RS17205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532225
AssemblyASM2553222v1 · Scaffoldhaploid
Genome composition4 231 528 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 52 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key