1 Response_reg#1
9-85 aa · 77 aa · 86.5% of protein
Raw token
Response_reg:9:9.93e-18:85:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4F52_RS03755
Response regulator, CheY family
Clostridioides difficile · GCF_025532225
ClassRRTypeCheYLength89 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025532225#J4F52_RS03755Stable P2CS identifier used across views.
GenomeGCF_025532225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length89 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage77 / 89 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa89 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:9.93e-18:85:78:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025532225::NZ_JAGDLZ010000007.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span219095-219364Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4F52_03680RefSeq proteinWP_330667104.1
Context group ID
GCF_025532225::NZ_JAGDLZ010000007.1::G00012Context members
J4F52_RS03755
Partner locus tags
J4F52_RS03755
Partner old locus tags
J4F52_03680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330667104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4F52_RS03755Primary locus identifier stored in the genes table.
Old locus tagJ4F52_03680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLZ010000007.1Sequence record reported by the local genomic context database.
Genomic interval219 095-219 364 nt270 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 095-219 364 ntGCF_025532225::NZ_JAGDLZ010000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532225::NZ_JAGDLZ010000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLZ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span219 095-219 364 nt270 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 095 nt219 364 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J4F52_RS03755GCF_025532225#J4F52_RS03755
RRCheYCurrent focus
219 095-219 364 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025532225#J4F52_RS03755The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474308
Simplified PFAM architecture for RROC_2474308
PFAM domain coverage: 78 / 89 aa (87.6%)
1 aa89 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-86]
- Domain count: 1
- Matched identifier: RROC_2474308
- Positioned domains: Response_reg 9-86
Cluster members and taxonomy
Representative gene: GCF_025532225#J4F52_RS03755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532225
AssemblyASM2553222v1 · Scaffoldhaploid
Genome composition4 231 528 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 52 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key