1 HisKA#1
90-150 aa · 61 aa · 20.3% of protein
Raw token
HisKA:90:0.000000000011:150:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4F52_RS03335
Histidine kinase, Classic
Clostridioides difficile · GCF_025532225
ClassHKTypeClassicLength300 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025532225#J4F52_RS03335Stable P2CS identifier used across views.
GenomeGCF_025532225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length300 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 300 aa (53.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa300 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-295 aa · 99 aa · 33.0% of protein
Raw token
HATPase_c:197:2.27e-17:295:105:109- Raw architecture: HisKA:90:0.000000000011:150:61:64#HATPase_c:197:2.27e-17:295:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025532225::NZ_JAGDLZ010000007.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span126892-127794Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4F52_03265RefSeq proteinWP_074044991.1
Context group ID
GCF_025532225::NZ_JAGDLZ010000007.1::G00010Context members
J4F52_RS03335
Partner locus tags
J4F52_RS03335
Partner old locus tags
J4F52_03265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_074044991.1Primary protein accession used for annex mappings.
UniProt accessionA0A414UXD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414UXD4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4F52_RS03335Primary locus identifier stored in the genes table.
Old locus tagJ4F52_03265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLZ010000007.1Sequence record reported by the local genomic context database.
Genomic interval126 892-127 794 nt903 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span126 892-127 794 ntGCF_025532225::NZ_JAGDLZ010000007.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532225::NZ_JAGDLZ010000007.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLZ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span126 892-127 794 nt903 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 892 nt127 794 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J4F52_RS03335GCF_025532225#J4F52_RS03335
HKClassicCurrent focus
126 892-127 794 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303575#BGU68_RS00195Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2886948
Simplified PFAM architecture for HKOC_2886948
PFAM domain coverage: 157 / 300 aa (52.3%)
1 aa300 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-148] | HATPase_c[199-295]
- Domain count: 2
- Matched identifier: HKOC_2886948
- Positioned domains: HisKA 89-148 ; HATPase_c 199-295
Cluster members and taxonomy
Representative gene: GCF_002303575#BGU68_RS00195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532225
AssemblyASM2553222v1 · Scaffoldhaploid
Genome composition4 231 528 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 52 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key