1 HisKA#1
116-169 aa · 54 aa · 15.9% of protein
Raw token
HisKA:116:0.00000478:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS22445
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS22445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 340 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa340 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-323 aa · 108 aa · 31.8% of protein
Raw token
HATPase_c:216:3.52e-27:323:108:109- Raw architecture: HisKA:116:0.00000478:169:59:64#HATPase_c:216:3.52e-27:323:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000025.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48115-49835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_22515RefSeq proteinWP_063226028.1
Context group ID
GCF_025519005::NZ_JAOPTI010000025.1::G00023Context members
OCF56_RS22440OCF56_RS22445
Partner locus tags
OCF56_RS22440OCF56_RS22445
Partner old locus tags
OCF56_22510OCF56_22515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063226028.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS22445Primary locus identifier stored in the genes table.
Old locus tagOCF56_22515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000025.1Sequence record reported by the local genomic context database.
Genomic interval48 813-49 835 nt1 023 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 115-49 835 ntGCF_025519005::NZ_JAOPTI010000025.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000025.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000025.1All displayed genes belong to this local TCS context.
Neighborhood span48 115-49 835 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 115 nt49 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS22440GCF_025519005#OCF56_RS22440
RROmpR
48 115-48 810 nt · Forward (+)
OCF56_RS22445GCF_025519005#OCF56_RS22445
HKClassicCurrent focus
48 813-49 835 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS12020Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2836936
Simplified PFAM architecture for HKOC_2836936
PFAM domain coverage: 108 / 340 aa (31.8%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-323]
- Domain count: 1
- Matched identifier: HKOC_2836936
- Positioned domains: HATPase_c 216-323
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS12020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key