1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.000000076:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS16460
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS16460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 360 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.00000000000000606:202:64:643 HATPase_c#3
251-349 aa · 99 aa · 27.5% of protein
Raw token
HATPase_c:251:4.81e-16:349:99:109- Raw architecture: HAMP:59:0.000000076:127:69:69#HisKA:139:0.00000000000000606:202:64:64#HATPase_c:251:4.81e-16:349:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000013.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50897-52662Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_16500RefSeq proteinWP_016101995.1
Context group ID
GCF_025519005::NZ_JAOPTI010000013.1::G00011Context members
OCF56_RS16455OCF56_RS16460
Partner locus tags
OCF56_RS16455OCF56_RS16460
Partner old locus tags
OCF56_16495OCF56_16500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016101995.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A0WPT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A0WPT1_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS16460Primary locus identifier stored in the genes table.
Old locus tagOCF56_16500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000013.1Sequence record reported by the local genomic context database.
Genomic interval51 580-52 662 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 897-52 662 ntGCF_025519005::NZ_JAOPTI010000013.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000013.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000013.1All displayed genes belong to this local TCS context.
Neighborhood span50 897-52 662 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 897 nt52 662 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS16455GCF_025519005#OCF56_RS16455
RROmpR
50 897-51 583 nt · Forward (+)
OCF56_RS16460GCF_025519005#OCF56_RS16460
HKClassicCurrent focus
51 580-52 662 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS16280Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2747228
Simplified PFAM architecture for HKOC_2747228
PFAM domain coverage: 204 / 360 aa (56.7%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-348]
- Domain count: 3
- Matched identifier: HKOC_2747228
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-348
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS16280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key