1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:2.23e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS15280
Response regulator OmpR family
Bacillus mycoides · GCF_025519005
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS15280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:5.28e-27:220:78:77- Raw architecture: Response_reg:4:2.23e-36:113:111:111#Trans_reg_C:143:5.28e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124525-126737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_15320RefSeq proteinWP_002010439.1
Context group ID
GCF_025519005::NZ_JAOPTI010000011.1::G00004Context members
OCF56_RS15280OCF56_RS15285
Partner locus tags
OCF56_RS15280OCF56_RS15285
Partner old locus tags
OCF56_15320OCF56_15325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002010439.1Primary protein accession used for annex mappings.
UniProt accessionR8HP58Primary UniProt accession resolved in the annex database.
UniProt IDR8HP58_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS15280Primary locus identifier stored in the genes table.
Old locus tagOCF56_15320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000011.1Sequence record reported by the local genomic context database.
Genomic interval124 525-125 196 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 525-126 737 ntGCF_025519005::NZ_JAOPTI010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000011.1All displayed genes belong to this local TCS context.
Neighborhood span124 525-126 737 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 525 nt126 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS15280GCF_025519005#OCF56_RS15280
RROmpRCurrent focus
124 525-125 196 nt · Forward (+)
OCF56_RS15285GCF_025519005#OCF56_RS15285
HKClassic
125 274-126 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586791
Simplified PFAM architecture for RROC_1586791
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[143-219]
- Domain count: 2
- Matched identifier: RROC_1586791
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 143-219 ; Trans_reg_C 143-219
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key