1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:3.59e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS15025
Response regulator NarL family
Bacillus mycoides · GCF_025519005
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS15025Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:9.89e-25:204:55:58- Raw architecture: Response_reg:4:3.59e-34:116:113:111#HTH_LUXR:150:9.89e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61542-64017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_15065RefSeq proteinWP_002035350.1
Context group ID
GCF_025519005::NZ_JAOPTI010000011.1::G00003Context members
OCF56_RS15025OCF56_RS15030
Partner locus tags
OCF56_RS15025OCF56_RS15030
Partner old locus tags
OCF56_15065OCF56_15070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002035350.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TPN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TPN7_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS15025Primary locus identifier stored in the genes table.
Old locus tagOCF56_15065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000011.1Sequence record reported by the local genomic context database.
Genomic interval61 542-62 183 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 542-64 017 ntGCF_025519005::NZ_JAOPTI010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000011.1All displayed genes belong to this local TCS context.
Neighborhood span61 542-64 017 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 542 nt64 017 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS15025GCF_025519005#OCF56_RS15025
RRNarLCurrent focus
61 542-62 183 nt · Reverse (-)
OCF56_RS15030GCF_025519005#OCF56_RS15030
HKClassic
62 185-64 017 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962476
Simplified PFAM architecture for RROC_1962476
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1962476
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key