1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:4.94e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS14950
Response regulator OmpR family
Bacillus mycoides · GCF_025519005
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS14950Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 225 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 34.7% of protein
Raw token
Trans_reg_C:143:1.43e-28:220:78:77- Raw architecture: Response_reg:4:4.94e-37:113:111:111#Trans_reg_C:143:1.43e-28:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43755-45814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_14990RefSeq proteinWP_002029819.1
Context group ID
GCF_025519005::NZ_JAOPTI010000011.1::G00002Context members
OCF56_RS14950OCF56_RS14955
Partner locus tags
OCF56_RS14950OCF56_RS14955
Partner old locus tags
OCF56_14990OCF56_14995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002029819.1Primary protein accession used for annex mappings.
UniProt accessionR8CIZ1Primary UniProt accession resolved in the annex database.
UniProt IDR8CIZ1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS14950Primary locus identifier stored in the genes table.
Old locus tagOCF56_14990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000011.1Sequence record reported by the local genomic context database.
Genomic interval43 755-44 432 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 755-45 814 ntGCF_025519005::NZ_JAOPTI010000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000011.1All displayed genes belong to this local TCS context.
Neighborhood span43 755-45 814 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 755 nt45 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS14950GCF_025519005#OCF56_RS14950
RROmpRCurrent focus
43 755-44 432 nt · Forward (+)
OCF56_RS14955GCF_025519005#OCF56_RS14955
HKClassic
44 444-45 814 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462540
Simplified PFAM architecture for RROC_1462540
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1462540
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02750
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 100 total members. Page 1 / 2.
GCF_000003925#BMYCO0001_RS02750 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key