1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:3.69e-23:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS12685
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS12685Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 376 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-367 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:282:0.000000000656:367:104:109- Raw architecture: HisKA_3:178:3.69e-23:241:64:68#HATPase_c:282:0.000000000656:367:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000008.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115929-117658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_12720RefSeq proteinWP_262449321.1
Context group ID
GCF_025519005::NZ_JAOPTI010000008.1::G00066Context members
OCF56_RS12685OCF56_RS12690
Partner locus tags
OCF56_RS12685OCF56_RS12690
Partner old locus tags
OCF56_12720OCF56_12725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262449321.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS12685Primary locus identifier stored in the genes table.
Old locus tagOCF56_12720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000008.1Sequence record reported by the local genomic context database.
Genomic interval115 929-117 059 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 929-117 658 ntGCF_025519005::NZ_JAOPTI010000008.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000008.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000008.1All displayed genes belong to this local TCS context.
Neighborhood span115 929-117 658 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 929 nt117 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS12685GCF_025519005#OCF56_RS12685
HKClassicCurrent focus
115 929-117 059 nt · Forward (+)
OCF56_RS12690GCF_025519005#OCF56_RS12690
RRNarL
117 056-117 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025519005#OCF56_RS12685The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2645619
Simplified PFAM architecture for HKOC_2645619
PFAM domain coverage: 295 / 376 aa (78.5%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-149] | HisKA_3[178-241] | HATPase_c[280-364]
- Domain count: 3
- Matched identifier: HKOC_2645619
- Positioned domains: DesK_N 4-149 ; HisKA_3 178-241 ; HATPase_c 280-364
Cluster members and taxonomy
Representative gene: GCF_025519005#OCF56_RS12685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key