1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:1.26e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS11050
Response regulator OmpR family
Bacillus mycoides · GCF_025519005
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS11050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 228 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:151:1.73e-26:224:77:77- Raw architecture: Response_reg:5:1.26e-36:114:111:111#Trans_reg_C:151:1.73e-26:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000006.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125328-127795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_11080RefSeq proteinWP_262449243.1
Context group ID
GCF_025519005::NZ_JAOPTI010000006.1::G00056Context members
OCF56_RS11045OCF56_RS11050
Partner locus tags
OCF56_RS11045OCF56_RS11050
Partner old locus tags
OCF56_11075OCF56_11080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262449243.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS11050Primary locus identifier stored in the genes table.
Old locus tagOCF56_11080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000006.1Sequence record reported by the local genomic context database.
Genomic interval127 109-127 795 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 328-127 795 ntGCF_025519005::NZ_JAOPTI010000006.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000006.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000006.1All displayed genes belong to this local TCS context.
Neighborhood span125 328-127 795 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 328 nt127 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS11045GCF_025519005#OCF56_RS11045
HKClassic
125 328-127 112 nt · Reverse (-)
OCF56_RS11050GCF_025519005#OCF56_RS11050
RROmpRCurrent focus
127 109-127 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025519005#OCF56_RS11050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1331166
Simplified PFAM architecture for RROC_1331166
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1331166
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_025519005#OCF56_RS11050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key