1 HisKA#1
124-170 aa · 47 aa · 14.4% of protein
Raw token
HisKA:124:0.00000908:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS10210
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength327 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS10210Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length327 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 327 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa327 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-324 aa · 108 aa · 33.0% of protein
Raw token
HATPase_c:217:3.28e-27:324:108:109- Raw architecture: HisKA:124:0.00000908:170:53:64#HATPase_c:217:3.28e-27:324:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000005.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164646-166333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_10240RefSeq proteinWP_262449213.1
Context group ID
GCF_025519005::NZ_JAOPTI010000005.1::G00053Context members
OCF56_RS10210OCF56_RS10215
Partner locus tags
OCF56_RS10210OCF56_RS10215
Partner old locus tags
OCF56_10240OCF56_10245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262449213.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS10210Primary locus identifier stored in the genes table.
Old locus tagOCF56_10240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000005.1Sequence record reported by the local genomic context database.
Genomic interval164 646-165 629 nt984 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span164 646-166 333 ntGCF_025519005::NZ_JAOPTI010000005.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000005.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span164 646-166 333 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 646 nt166 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS10210GCF_025519005#OCF56_RS10210
HKClassicCurrent focus
164 646-165 629 nt · Reverse (-)
OCF56_RS10215GCF_025519005#OCF56_RS10215
RROmpR
165 626-166 333 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025519005#OCF56_RS10210The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2862278
Simplified PFAM architecture for HKOC_2862278
PFAM domain coverage: 107 / 327 aa (32.7%)
1 aa327 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-323]
- Domain count: 1
- Matched identifier: HKOC_2862278
- Positioned domains: HATPase_c 217-323
Cluster members and taxonomy
Representative gene: GCF_025519005#OCF56_RS10210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key