1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000207:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS09680
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS09680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 490 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000399:323:66:643 HATPase_c#3
369-480 aa · 112 aa · 22.9% of protein
Raw token
HATPase_c:369:7.09e-17:480:113:109- Raw architecture: HAMP:164:0.00000000000000207:233:70:69#HisKA:258:0.0000000000000399:323:66:64#HATPase_c:369:7.09e-17:480:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000005.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58468-60598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_09710RefSeq proteinWP_002168308.1
Context group ID
GCF_025519005::NZ_JAOPTI010000005.1::G00050Context members
OCF56_RS09680OCF56_RS09685
Partner locus tags
OCF56_RS09680OCF56_RS09685
Partner old locus tags
OCF56_09710OCF56_09715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002168308.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R5E7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R5E7_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS09680Primary locus identifier stored in the genes table.
Old locus tagOCF56_09710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000005.1Sequence record reported by the local genomic context database.
Genomic interval58 468-59 940 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 468-60 598 ntGCF_025519005::NZ_JAOPTI010000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span58 468-60 598 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 468 nt60 598 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS09680GCF_025519005#OCF56_RS09680
HKClassicCurrent focus
58 468-59 940 nt · Reverse (-)
OCF56_RS09685GCF_025519005#OCF56_RS09685
RROmpR
59 933-60 598 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS14450Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533820
Simplified PFAM architecture for HKOC_1533820
PFAM domain coverage: 229 / 490 aa (46.7%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1533820
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS14450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key