1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.17e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS08985
Response regulator OmpR family
Bacillus mycoides · GCF_025519005
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS08985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:4.64e-36:227:77:77- Raw architecture: Response_reg:5:1.17e-32:114:111:111#Trans_reg_C:151:4.64e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000004.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143934-145563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_09015RefSeq proteinWP_002167605.1
Context group ID
GCF_025519005::NZ_JAOPTI010000004.1::G00047Context members
OCF56_RS08985OCF56_RS08990
Partner locus tags
OCF56_RS08985OCF56_RS08990
Partner old locus tags
OCF56_09015OCF56_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167605.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R887Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R887_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS08985Primary locus identifier stored in the genes table.
Old locus tagOCF56_09015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000004.1Sequence record reported by the local genomic context database.
Genomic interval143 934-144 626 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span143 934-145 563 ntGCF_025519005::NZ_JAOPTI010000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000004.1All displayed genes belong to this local TCS context.
Neighborhood span143 934-145 563 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 934 nt145 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS08985GCF_025519005#OCF56_RS08985
RROmpRCurrent focus
143 934-144 626 nt · Forward (+)
OCF56_RS08990GCF_025519005#OCF56_RS08990
HKClassic
144 628-145 563 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS04960Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201171
Simplified PFAM architecture for RROC_1201171
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1201171
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS04960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key