1 HisKA_3#1
502-562 aa · 61 aa · 8.6% of protein
Raw token
HisKA_3:502:0.0000021:562:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS06250
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength713 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS06250Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 713 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
605-699 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:605:1.6e-20:699:105:109- Raw architecture: HisKA_3:502:0.0000021:562:65:68#HATPase_c:605:1.6e-20:699:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1577-4298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_06270RefSeq proteinWP_002167991.1
Context group ID
GCF_025519005::NZ_JAOPTI010000003.1::G00039Context members
OCF56_RS06250OCF56_RS06255
Partner locus tags
OCF56_RS06250OCF56_RS06255
Partner old locus tags
OCF56_06270OCF56_06275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167991.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R4C8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R4C8_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS06250Primary locus identifier stored in the genes table.
Old locus tagOCF56_06270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000003.1Sequence record reported by the local genomic context database.
Genomic interval1 577-3 718 nt2 142 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 577-4 298 ntGCF_025519005::NZ_JAOPTI010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000003.1All displayed genes belong to this local TCS context.
Neighborhood span1 577-4 298 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 577 nt4 298 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS06250GCF_025519005#OCF56_RS06250
HKClassicCurrent focus
1 577-3 718 nt · Forward (+)
OCF56_RS06255GCF_025519005#OCF56_RS06255
RRNarL
3 690-4 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS11065Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745473
Simplified PFAM architecture for HKOC_0745473
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745473
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS11065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key