1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:1.18e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS06120
Response regulator NarL family
Bacillus mycoides · GCF_025519005
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS06120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:2.68e-18:205:54:58- Raw architecture: Response_reg:5:1.18e-28:116:113:111#HTH_LUXR:152:2.68e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000002.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span451073-452816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_06140RefSeq proteinWP_002012250.1
Context group ID
GCF_025519005::NZ_JAOPTI010000002.1::G00034Context members
OCF56_RS06120OCF56_RS06125
Partner locus tags
OCF56_RS06120OCF56_RS06125
Partner old locus tags
OCF56_06140OCF56_06145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002012250.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AIC1Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AIC1_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS06120Primary locus identifier stored in the genes table.
Old locus tagOCF56_06140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000002.1Sequence record reported by the local genomic context database.
Genomic interval451 073-451 711 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span451 073-452 816 ntGCF_025519005::NZ_JAOPTI010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span451 073-452 816 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
451 073 nt452 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS06120GCF_025519005#OCF56_RS06120
RRNarLCurrent focus
451 073-451 711 nt · Forward (+)
OCF56_RS06125GCF_025519005#OCF56_RS06125
HKClassic
451 716-452 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS08525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1985896
Simplified PFAM architecture for RROC_1985896
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1985896
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-205 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS08525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key