1 Hpt#1
4-96 aa · 93 aa · 14.2% of protein
Raw token
Hpt:4:2.12e-16:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS05525
Histidine kinase, CheA
Bacillus mycoides · GCF_025519005
ClassHKTypeCheALength656 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS05525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length656 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 656 aa (64.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa656 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
273-332 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:273:0.00000000228:332:67:673 HATPase_c#3
380-519 aa · 140 aa · 21.3% of protein
Raw token
HATPase_c:380:7.88e-18:519:140:1094 CheW#4
524-656 aa · 133 aa · 20.3% of protein
Raw token
CheW:524:6.58e-22:656:139:138- Raw architecture: Hpt:4:2.12e-16:96:93:84#H-kinase_dim:273:0.00000000228:332:67:67#HATPase_c:380:7.88e-18:519:140:109#CheW:524:6.58e-22:656:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000002.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span341348-343816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_05545RefSeq proteinWP_002141100.1
Context group ID
GCF_025519005::NZ_JAOPTI010000002.1::G00032Context members
OCF56_RS05520OCF56_RS05525
Partner locus tags
OCF56_RS05520OCF56_RS05525
Partner old locus tags
OCF56_05540OCF56_05545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002141100.1Primary protein accession used for annex mappings.
UniProt accessionA0A084J5Z0Primary UniProt accession resolved in the annex database.
UniProt IDA0A084J5Z0_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS05525Primary locus identifier stored in the genes table.
Old locus tagOCF56_05545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000002.1Sequence record reported by the local genomic context database.
Genomic interval341 846-343 816 nt1 971 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span341 348-343 816 ntGCF_025519005::NZ_JAOPTI010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span341 348-343 816 nt2 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
341 348 nt343 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS05520GCF_025519005#OCF56_RS05520
RRCheY
341 348-341 716 nt · Forward (+)
OCF56_RS05525GCF_025519005#OCF56_RS05525
HKCheACurrent focus
341 846-343 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS08080Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0881117
Simplified PFAM architecture for HKOC_0881117
PFAM domain coverage: 509 / 656 aa (77.6%)
1 aa656 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[273-331] | HATPase_c[380-519] | CheW[525-656]
- Domain count: 5
- Matched identifier: HKOC_0881117
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 273-331 ; HATPase_c 380-519 ; CheW 525-656
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS08080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key