1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:5.3e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS05520
Response regulator, CheY family
Bacillus mycoides · GCF_025519005
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS05520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:5.3e-30:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000002.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span341348-343816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_05540RefSeq proteinWP_000940577.1
Context group ID
GCF_025519005::NZ_JAOPTI010000002.1::G00032Context members
OCF56_RS05520OCF56_RS05525
Partner locus tags
OCF56_RS05520OCF56_RS05525
Partner old locus tags
OCF56_05540OCF56_05545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000940577.1Primary protein accession used for annex mappings.
UniProt accessionR8H136Primary UniProt accession resolved in the annex database.
UniProt IDR8H136_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS05520Primary locus identifier stored in the genes table.
Old locus tagOCF56_05540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000002.1Sequence record reported by the local genomic context database.
Genomic interval341 348-341 716 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span341 348-343 816 ntGCF_025519005::NZ_JAOPTI010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span341 348-343 816 nt2 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
341 348 nt343 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS05520GCF_025519005#OCF56_RS05520
RRCheYCurrent focus
341 348-341 716 nt · Forward (+)
OCF56_RS05525GCF_025519005#OCF56_RS05525
HKCheA
341 846-343 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS08075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2402711
Simplified PFAM architecture for RROC_2402711
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2402711
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS08075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key