1 HAMP#1
176-244 aa · 69 aa · 11.7% of protein
Raw token
HAMP:176:0.00000000000000503:244:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS04785
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS04785Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage348 / 591 aa (58.9%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS#2
255-355 aa · 101 aa · 17.1% of protein
Raw token
PAS:255:0.0000112:355:113:1133 HisKA#3
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:4.14e-18:431:68:644 HATPase_c#4
478-587 aa · 110 aa · 18.6% of protein
Raw token
HATPase_c:478:6.49e-34:587:110:109- Raw architecture: HAMP:176:0.00000000000000503:244:69:69#PAS:255:0.0000112:355:113:113#HisKA:364:4.14e-18:431:68:64#HATPase_c:478:6.49e-34:587:110:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201642-204133Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_04805RefSeq proteinWP_262448995.1
Context group ID
GCF_025519005::NZ_JAOPTI010000002.1::G00031Context members
OCF56_RS04780OCF56_RS04785
Partner locus tags
OCF56_RS04780OCF56_RS04785
Partner old locus tags
OCF56_04800OCF56_04805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262448995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS04785Primary locus identifier stored in the genes table.
Old locus tagOCF56_04805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000002.1Sequence record reported by the local genomic context database.
Genomic interval202 358-204 133 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span201 642-204 133 ntGCF_025519005::NZ_JAOPTI010000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span201 642-204 133 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 642 nt204 133 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS04780GCF_025519005#OCF56_RS04780
RROmpR
201 642-202 358 nt · Forward (+)
OCF56_RS04785GCF_025519005#OCF56_RS04785
HKClassicCurrent focus
202 358-204 133 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025519005#OCF56_RS04785The current gene is the representative for this cluster.
PFAM architectureHisK_sensor + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1108063
Simplified PFAM architecture for HKOC_1108063
PFAM domain coverage: 357 / 591 aa (60.4%)
1 aa591 aa
HisK_sensorHAMPHisKAHATPase_c
- Simplified architecture: HisK_sensor + HAMP + HisKA + HATPase_c
- Raw architecture: HisK_sensor[38-163] | HAMP[193-244] | HisKA[364-431] | HATPase_c[478-588]
- Domain count: 4
- Matched identifier: HKOC_1108063
- Positioned domains: HisK_sensor 38-163 ; HAMP 193-244 ; HisKA 364-431 ; HATPase_c 478-588
Cluster members and taxonomy
Representative gene: GCF_025519005#OCF56_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key