1 Hpt#1
4-96 aa · 93 aa · 13.9% of protein
Raw token
Hpt:4:5.78e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS17715
Histidine kinase, CheA
Bacillus wiedmannii · GCF_025518765
ClassHKTypeCheALength667 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS17715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length667 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 667 aa (63.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa667 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
284-343 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:284:0.00000000337:343:67:673 HATPase_c#3
391-530 aa · 140 aa · 21.0% of protein
Raw token
HATPase_c:391:1.23e-17:530:140:1094 CheW#4
535-667 aa · 133 aa · 19.9% of protein
Raw token
CheW:535:1.95e-21:667:139:138- Raw architecture: Hpt:4:5.78e-17:96:93:84#H-kinase_dim:284:0.00000000337:343:67:67#HATPase_c:391:1.23e-17:530:140:109#CheW:535:1.95e-21:667:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68423-70924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_17750RefSeq proteinWP_098102201.1
Context group ID
GCF_025518765::NZ_JAOPTH010000014.1::G00008Context members
OCF58_RS17715OCF58_RS17720
Partner locus tags
OCF58_RS17715OCF58_RS17720
Partner old locus tags
OCF58_17750OCF58_17755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098102201.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5XI62Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5XI62_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS17715Primary locus identifier stored in the genes table.
Old locus tagOCF58_17750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000014.1Sequence record reported by the local genomic context database.
Genomic interval68 423-70 426 nt2 004 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 423-70 924 ntGCF_025518765::NZ_JAOPTH010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000014.1All displayed genes belong to this local TCS context.
Neighborhood span68 423-70 924 nt2 502 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 423 nt70 924 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS17715GCF_025518765#OCF58_RS17715
HKCheACurrent focus
68 423-70 426 nt · Reverse (-)
OCF58_RS17720GCF_025518765#OCF58_RS17720
RRCheY
70 556-70 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555385#CN611_RS08685Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0853931
Simplified PFAM architecture for HKOC_0853931
PFAM domain coverage: 509 / 667 aa (76.3%)
1 aa667 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[284-342] | HATPase_c[391-530] | CheW[536-667]
- Domain count: 5
- Matched identifier: HKOC_0853931
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 284-342 ; HATPase_c 391-530 ; CheW 536-667
Cluster members and taxonomy
Representative gene: GCF_002555385#CN611_RS08685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key