1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.000000000818:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS15940
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS15940Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 452 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-300 aa · 68 aa · 15.0% of protein
Raw token
HisKA:233:0.0000000000000129:300:68:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:9.4e-30:449:108:109- Raw architecture: HAMP:158:0.000000000818:229:72:69#HisKA:233:0.0000000000000129:300:68:64#HATPase_c:343:9.4e-30:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115498-117543Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_15970RefSeq proteinWP_222655354.1
Context group ID
GCF_025518765::NZ_JAOPTH010000011.1::G00006Context members
OCF58_RS15935OCF58_RS15940
Partner locus tags
OCF58_RS15935OCF58_RS15940
Partner old locus tags
OCF58_15965OCF58_15970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_222655354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS15940Primary locus identifier stored in the genes table.
Old locus tagOCF58_15970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000011.1Sequence record reported by the local genomic context database.
Genomic interval116 185-117 543 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 498-117 543 ntGCF_025518765::NZ_JAOPTH010000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000011.1All displayed genes belong to this local TCS context.
Neighborhood span115 498-117 543 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 498 nt117 543 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS15935GCF_025518765#OCF58_RS15935
RROmpR
115 498-116 181 nt · Forward (+)
OCF58_RS15940GCF_025518765#OCF58_RS15940
HKClassicCurrent focus
116 185-117 543 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019837545#ILT06_RS18610Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1943463
Simplified PFAM architecture for HKOC_1943463
PFAM domain coverage: 346 / 452 aa (76.5%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[30-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1943463
- Positioned domains: ArlS_N 30-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_019837545#ILT06_RS18610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key