1 HAMP#1
161-229 aa · 69 aa · 15.0% of protein
Raw token
HAMP:161:0.0000000000000024:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS12665
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS12665Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 461 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000126:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:346:3.74e-36:454:109:109- Raw architecture: HAMP:161:0.0000000000000024:229:69:69#HisKA:234:0.0000000000000126:299:66:64#HATPase_c:346:3.74e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000007.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136694-138768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_12685RefSeq proteinWP_262787040.1
Context group ID
GCF_025518765::NZ_JAOPTH010000007.1::G00069Context members
OCF58_RS12665OCF58_RS12670
Partner locus tags
OCF58_RS12665OCF58_RS12670
Partner old locus tags
OCF58_12685OCF58_12690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262787040.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS12665Primary locus identifier stored in the genes table.
Old locus tagOCF58_12685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000007.1Sequence record reported by the local genomic context database.
Genomic interval136 694-138 079 nt1 386 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 694-138 768 ntGCF_025518765::NZ_JAOPTH010000007.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000007.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000007.1All displayed genes belong to this local TCS context.
Neighborhood span136 694-138 768 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 694 nt138 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS12665GCF_025518765#OCF58_RS12665
HKClassicCurrent focus
136 694-138 079 nt · Reverse (-)
OCF58_RS12670GCF_025518765#OCF58_RS12670
RROmpR
138 091-138 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025518765#OCF58_RS12665The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1828126
Simplified PFAM architecture for HKOC_1828126
PFAM domain coverage: 226 / 461 aa (49.0%)
1 aa461 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1828126
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_025518765#OCF58_RS12665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key