1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.000000000000139:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS09955
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS09955Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.00000000000000301:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:2.02e-22:616:112:109- Raw architecture: HAMP:311:0.000000000000139:378:68:69#HisKA:398:0.00000000000000301:462:65:64#HATPase_c:506:2.02e-22:616:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000005.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77713-80252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_09975RefSeq proteinWP_001225372.1
Context group ID
GCF_025518765::NZ_JAOPTH010000005.1::G00056Context members
OCF58_RS09950OCF58_RS09955
Partner locus tags
OCF58_RS09950OCF58_RS09955
Partner old locus tags
OCF58_09970OCF58_09975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001225372.1Primary protein accession used for annex mappings.
UniProt accessionA0AB37YZ17Primary UniProt accession resolved in the annex database.
UniProt IDA0AB37YZ17_9BACIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS09955Primary locus identifier stored in the genes table.
Old locus tagOCF58_09975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000005.1Sequence record reported by the local genomic context database.
Genomic interval78 399-80 252 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 713-80 252 ntGCF_025518765::NZ_JAOPTH010000005.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000005.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000005.1All displayed genes belong to this local TCS context.
Neighborhood span77 713-80 252 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 713 nt80 252 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS09950GCF_025518765#OCF58_RS09950
RROmpR
77 713-78 402 nt · Forward (+)
OCF58_RS09955GCF_025518765#OCF58_RS09955
HKClassicCurrent focus
78 399-80 252 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293565#IEO_RS21950Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982035
Simplified PFAM architecture for HKOC_0982035
PFAM domain coverage: 225 / 617 aa (36.5%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[507-616]
- Domain count: 3
- Matched identifier: HKOC_0982035
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 507-616
Cluster members and taxonomy
Representative gene: GCF_000293565#IEO_RS21950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key