1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000954:269:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS09825
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS09825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 502 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.0000000000000121:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:2.18e-20:501:109:109- Raw architecture: HAMP:205:0.00000000954:269:65:69#HisKA:280:0.0000000000000121:347:68:64#HATPase_c:394:2.18e-20:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000005.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58451-60644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_09845RefSeq proteinWP_064474458.1
Context group ID
GCF_025518765::NZ_JAOPTH010000005.1::G00055Context members
OCF58_RS09820OCF58_RS09825
Partner locus tags
OCF58_RS09820OCF58_RS09825
Partner old locus tags
OCF58_09840OCF58_09845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_064474458.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS09825Primary locus identifier stored in the genes table.
Old locus tagOCF58_09845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000005.1Sequence record reported by the local genomic context database.
Genomic interval59 136-60 644 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 451-60 644 ntGCF_025518765::NZ_JAOPTH010000005.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000005.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000005.1All displayed genes belong to this local TCS context.
Neighborhood span58 451-60 644 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 451 nt60 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS09820GCF_025518765#OCF58_RS09820
RROmpR
58 451-59 152 nt · Forward (+)
OCF58_RS09825GCF_025518765#OCF58_RS09825
HKClassicCurrent focus
59 136-60 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS04920Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464425
Simplified PFAM architecture for HKOC_1464425
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1464425
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS04920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key