1 Response_reg#1
6-114 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:6:5.08e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS07780
Response regulator OmpR family
Bacillus wiedmannii · GCF_025518765
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS07780Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:154:4.85e-34:231:78:77- Raw architecture: Response_reg:6:5.08e-35:114:110:111#Trans_reg_C:154:4.85e-34:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000003.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span327014-329470Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_07795RefSeq proteinWP_262786952.1
Context group ID
GCF_025518765::NZ_JAOPTH010000003.1::G00038Context members
OCF58_RS07775OCF58_RS07780
Partner locus tags
OCF58_RS07775OCF58_RS07780
Partner old locus tags
OCF58_07790OCF58_07795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262786952.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS07780Primary locus identifier stored in the genes table.
Old locus tagOCF58_07795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000003.1Sequence record reported by the local genomic context database.
Genomic interval328 766-329 470 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span327 014-329 470 ntGCF_025518765::NZ_JAOPTH010000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span327 014-329 470 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
327 014 nt329 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS07775GCF_025518765#OCF58_RS07775
HKClassic
327 014-328 756 nt · Reverse (-)
OCF58_RS07780GCF_025518765#OCF58_RS07780
RROmpRCurrent focus
328 766-329 470 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025518765#OCF58_RS07780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1065849
Simplified PFAM architecture for RROC_1065849
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1065849
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_025518765#OCF58_RS07780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key