1 Response_reg#1
7-119 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:7:4.42e-25:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS07520
Response regulator NarL family
Bacillus wiedmannii · GCF_025518765
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS07520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 222 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.7% of protein
Raw token
HTH_LUXR:159:5.66e-25:215:57:58- Raw architecture: Response_reg:7:4.42e-25:119:113:111#HTH_LUXR:159:5.66e-25:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span276226-278048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_07530RefSeq proteinWP_262786942.1
Context group ID
GCF_025518765::NZ_JAOPTH010000003.1::G00037Context members
OCF58_RS07520OCF58_RS07525
Partner locus tags
OCF58_RS07520OCF58_RS07525
Partner old locus tags
OCF58_07530OCF58_07535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262786942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS07520Primary locus identifier stored in the genes table.
Old locus tagOCF58_07530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000003.1Sequence record reported by the local genomic context database.
Genomic interval276 226-276 894 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span276 226-278 048 ntGCF_025518765::NZ_JAOPTH010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span276 226-278 048 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 226 nt278 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS07520GCF_025518765#OCF58_RS07520
RRNarLCurrent focus
276 226-276 894 nt · Reverse (-)
OCF58_RS07525GCF_025518765#OCF58_RS07525
HKClassic
276 891-278 048 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025518765#OCF58_RS07520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1658953
Simplified PFAM architecture for RROC_1658953
PFAM domain coverage: 168 / 222 aa (75.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[160-215]
- Domain count: 2
- Matched identifier: RROC_1658953
- Positioned domains: Response_reg 7-118 ; GerE 160-215
Cluster members and taxonomy
Representative gene: GCF_025518765#OCF58_RS07520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key