1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.000000000000656:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS02515
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS02515Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage412 / 523 aa (78.8%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
204-318 aa · 115 aa · 22.0% of protein
Raw token
GAF_3:204:0.0000000000645:318:122:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:2.39e-21:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.00000000142:523:106:109- Raw architecture: GAF:29:0.000000000000656:166:141:133#GAF_3:204:0.0000000000645:318:122:129#HisKA_3:333:2.39e-21:400:68:68#HATPase_c:433:0.00000000142:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span487540-489779Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_02520RefSeq proteinWP_088047714.1
Context group ID
GCF_025518765::NZ_JAOPTH010000001.1::G00015Context members
OCF58_RS02510OCF58_RS02515
Partner locus tags
OCF58_RS02510OCF58_RS02515
Partner old locus tags
OCF58_02515OCF58_02520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088047714.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5XCY0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5XCY0_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS02515Primary locus identifier stored in the genes table.
Old locus tagOCF58_02520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000001.1Sequence record reported by the local genomic context database.
Genomic interval488 208-489 779 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span487 540-489 779 ntGCF_025518765::NZ_JAOPTH010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span487 540-489 779 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
487 540 nt489 779 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS02510GCF_025518765#OCF58_RS02510
RRNarL
487 540-488 187 nt · Reverse (-)
OCF58_RS02515GCF_025518765#OCF58_RS02515
HKClassicCurrent focus
488 208-489 779 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555385#CN611_RS03670Use this link to inspect the representative gene detail.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1380663
Simplified PFAM architecture for HKOC_1380663
PFAM domain coverage: 412 / 523 aa (78.8%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[204-318] | HisKA_3[333-400] | HATPase_c[434-523]
- Domain count: 4
- Matched identifier: HKOC_1380663
- Positioned domains: GAF_2 28-166 ; GAF_3 204-318 ; HisKA_3 333-400 ; HATPase_c 434-523
Cluster members and taxonomy
Representative gene: GCF_002555385#CN611_RS03670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key